Well then. I have answers...looks like cylinder 3-4 where giving me trouble. Ran test turning injectors on and off. Looks like cylinder 3 and 4 have died. Replaced injectors, ran and started fine...no weird noises, but still a misfire persisted. Removed engine, pulled the dang thing apart...to find out that there is a piece of piston ring missing, "cylinder 4", and that cylinder 3/4 main bearing had spun. Rod bearings where prefect. Go figure. Time to rebuild it tomorrow. See photos.